Topic: forensic genetics
GUO Jiangling, SHANG Lei, TANG Zhen, DING Guangshu, LI Wanshui, YU Zhengliang, YUAN Liping, SUN Jing, SUN Hui
Presently, such an increasing demand emerges for the identification of complex genetic relationships in forensic practice that requires the combination of a variety of genetic markers, e.g., STRs, X/Y specific indicators, SNPs and mitochondrial DNA. Next generation sequencing (NGS) approach is able to integrate multiple genetic markers into one detection system, excelling the traditional capillary electrophoresis (CE) technology in overcoming the cumbersome operational procedures and experimental handling. Here, a typing panel, designated as DNATyperTMNGSPanel v1.0, was developed with enclosure of human 29 autosomal STRs, 36 Y-STRs, 32 X-STRs, 71 Y-SNPs and the whole genome of mtDNA. Its validation was implemented under the guidelines of the Scientific Working Group on DNA Analysis Methods (SWGDAM), having evaluated the items of repeatability, accuracy, consistency, sensitivity, mixture and species specificity. For the developed DNATyperTMNGSPanel v1.0, a consistency of 99.72% was shown to the detection with CE, plus the complete identical results coming true between the genic loci shared with it and the Forenseq™ DNA Signature Prep Kit. No allelic loss occurred to the DNA template of 0.5 to 10 ng, yet the respective 2 and 9 loci being lost with the 0.25 ng and 0.125 ng of template. Regarding to the mixture of male and female substances, the mixed ratio of 2׃1 had the the female’s begun to appear allelic loss, contrasting that the mixed ratios of 9׃1, 4׃1, 2׃1 and 1׃1 brought the positive detections to 54.72%, 81.13%, 98.11% and 100%; and the mixed ratio of 1׃4 made the male’s happen to allelic loss, opposite the mixed ratios of 1׃1, 1׃2, 1׃4 and 1׃9 rendering the positive detections to 100%, 100%, 90.24% and 82.93%. The test of species specificity proved that the developed DNATyperTMNGSPanel v1.0 hardly amplified the DNA from pig, cattle, mouse, either the cynomolgus monkey or the rhesus one. In conclusion, the developed DNATyperTMNGSPanel v1.0 is of high detection throughput, high sensitivity and stability, accurate and repeatable typing and good ability for mixed sample to detect. Also, it can deliver the genetic information related to paternity and maternity at the same time in just a single run of test with any common biological samples, hence eligible for boosting the capability of individual identification and efficiency of consanguinity determination.