GU Lihua, YANG Fan, MEI Xinglin, ZHOU Huaigu
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Objective To develop a 6-dye fluorescence-labelling PCR multiplex protocol that directly amplifies 15 autosomal and 18 Y STR loci plus one Amelogenin gender indicator without DNA extraction, and evaluate its forensic applicability. Methods With 800 DNA samples of inter-irrelevant individuals, the developed protocol was tested by the samples to be amplified locally at the 15 autosomal (D3S1358, D13S317, D7S820, D16S539, TPOX, TH01, D2S1338, CSF1PO, D19S433, vWA, D21S11, D18S51, D8S1179, D5S818, FGA) and 18 Y STR loci (DYS527a/b, DYS448, DYS456, DYS385a/b, DYS458, DYS391, DYS390, DYS19, DYS438, DYS393, DYS389Ⅰ, DYS439, DYS389Ⅱ, DYS392, GATA, DYS635) plus the gender marker Amelogenin. The protocol was evaluated on its stability, sensitivity, species specificity, viability and anti-inhibition. Results All the selected-34-locus STR profiles were accurately and steadily amplified from the 800 samples by the developed protocol, with the high species specificity to be met and the detectable minimal DNA amount equal to or over 0.125ng. The 38 samples from real cases were correctly exposed of their genotypes. All the male STR loci had been exactly revealed when the control DNA was mixed with that of male and female in a ratio at or over 1: 4. Moreover, the anti-inhibition assay demonstrated that all the STR loci can be shown if the DNA template contains at or below certain concentrations of given PCR-inhibitors. Conclusion The developed protocol can be used to amplify the designed 15 autosomal and 18 Y STR loci plus the sex-typing marker Amelogenin with high portability, stability and sensitivity, capable of providing a new way for forensic DNA analysis.